PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00157025001

Common Name

GSBRNA2T00157025001, LOC106442632

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 202aa MW: 22305.9 Da PI: 4.2886

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00157025001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	69.7	6.5e-22	6	107	2	97
DUF260 2 CaaCkvlrr.kCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqq 85 C aC + + C+ + Cv+apyfp+++p kf vh +FG++nv+k+l++l ++ +re a+++l+yeAear++dP++ + + +++ GSBRNA2T00157025001 6 CVACNFTDNgPCTlgngNACVMAPYFPSTEPDKFDRVHIVFGVENVCKILSRLeEPWQREYAANALCYEAEARIHDPIHDYLVPQMVYNN 95 9999998876897444467********************************55667*******************99999999999 PP DUF260 86 qleqlkaelall 97 l++lk e++++ GSBRNA2T00157025001 96 ILNNLKREIDSA 107 999999988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	6.9E-21	6	106	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	14.651	9	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDLPNCVACN FTDNGPCTLG NGNACVMAPY FPSTEPDKFD RVHIVFGVEN VCKILSRLEE 60 PWQREYAANA LCYEAEARIH DPIHDYLVPQ MVYNNILNNL KREIDSAINE LSITMAKVPQ 120 YSNLPIPSDF TKPSLFALIN EMLELNEDQK NQLRGLPDVD ARRNVDEIVG MRENDQGDVH 180 GADGASTSSG PSSGPPNQNQ P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-20	6	111	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-20	6	111	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00157025001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013739748.1	1e-149	LOB domain-containing protein 32
TrEMBL	A0A0D3DFG2	1e-132	A0A0D3DFG2_BRAOL; Uncharacterized protein
STRING	Bo7g108100.1	1e-132	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4525	14	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35900.1	2e-36	LOB domain-containing protein 35

Link Out ? help Back to Top
Entrez Gene	106442632

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]