PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157026001
Common NameGSBRNA2T00157026001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 157aa    MW: 17332.4 Da    PI: 4.436
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157026001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26074.91.5e-23697287
               DUF260  2 CaaCkvlrrkCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavg.vilklqqql 87
                         CaaC ++   C+    + Cv+apyfp+++p+kf  v+k+FG+ nv k+l++l ++ +++ a+++l+yeAear++dP++G ++ ++++l +++
  GSBRNA2T00157026001  6 CAACEFMTGPCTlgngNACVMAPYFPSTEPEKFDRVNKVFGVVNVYKILSRLeEPWQHQYAANALCYEAEARIHDPIHGYLEpTLFALINEM 97
                         ***********8555467**********************************55567999*******************8763445555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.3014109IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-22698IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MNFAICAACE FMTGPCTLGN GNACVMAPYF PSTEPEKFDR VNKVFGVVNV YKILSRLEEP  60
WQHQYAANAL CYEAEARIHD PIHGYLEPTL FALINEMLEL NEDQKNQLMG LPDVDARRNV  120
DEIVGMREND QGDVHRANGA STSFGPSSGP PNQNQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-194841085LOB family transfactor Ramosa2.1
5ly0_B4e-194841085LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157026001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597302.15e-85PREDICTED: LOB domain-containing protein 35-like
TrEMBLM4DS718e-97M4DS71_BRARP; Uncharacterized protein
STRINGBra019364.1-P1e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.15e-23LOB domain-containing protein 35
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]