PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157028001
Common NameGSBRNA2T00157028001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 131aa    MW: 14741 Da    PI: 8.2113
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157028001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26076.45.1e-24391241498
               DUF260  14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                          ++Cv+apyfp+++p kf  vhk+FG++nv k+l++l ++ + e a+++l+yeAear++dP++G vg  + +++ l++lk e++++ 
  GSBRNA2T00157028001  39 NSCVMAPYFPSKEPDKFDRVHKVFGVENVYKILSRLeEPWQSEYAVNALCYEAEARIHDPIHGYVGPQMIYNNILNNLKREIDSAI 124
                          68**********************************55556899***********************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.6925127IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-2339122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MSSLKIKGKP KKKKNGFTNL CCMQLHEQHN GPCTLGSGNS CVMAPYFPSK EPDKFDRVHK  60
VFGVENVYKI LSRLEEPWQS EYAVNALCYE AEARIHDPIH GYVGPQMIYN NILNNLKREI  120
DSAINELAIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-244112726111LOB family transfactor Ramosa2.1
5ly0_B5e-244112726111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157028001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595095.17e-62PREDICTED: LOB domain-containing protein 32-like
SwissprotQ9FFL32e-23LBD35_ARATH; LOB domain-containing protein 35
TrEMBLA0A0D3DFG56e-90A0A0D3DFG5_BRAOL; Uncharacterized protein
STRINGBo7g108130.11e-90(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.11e-25LOB domain-containing protein 35
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]