PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157585001
Common NameGSBRNA2T00157585001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 258aa    MW: 29735.3 Da    PI: 7.3075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157585001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-141663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l + +  +G  +W+t++ + g+ R +k+c++rw +yl
  GSBRNA2T00157585001 16 KGFWSPEEDEKLRRFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 63
                         688*******************************************97 PP
2Myb_DNA-binding48.22.4e-1573114548
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++eE+e+++  +  lG++ W++Ia++++ gRt++++k++w+++l
  GSBRNA2T00157585001  73 SAEEEEIILTFHSSLGNK-WSKIAQYLP-GRTDNEIKNYWHSHL 114
                          89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2421163IPR017930Myb domain
SuperFamilySSF466891.76E-2713110IPR009057Homeodomain-like
SMARTSM007173.8E-101565IPR001005SANT/Myb domain
PfamPF002497.5E-121763IPR001005SANT/Myb domain
CDDcd001674.33E-81963No hitNo description
Gene3DG3DSA:1.10.10.604.6E-201970IPR009057Homeodomain-like
PROSITE profilePS5129422.23664118IPR017930Myb domain
SMARTSM007172.7E-1368116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2371117IPR009057Homeodomain-like
CDDcd001673.55E-1073114No hitNo description
PfamPF002491.3E-1373114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAKTKSGEML KERQRKGFWS PEEDEKLRRF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI  60
NYLRPGLKRD MISAEEEEII LTFHSSLGNK WSKIAQYLPG RTDNEIKNYW HSHLKKRWLK  120
PPSIERNPQT LVSNHVISFQ GLPDKTSSSP SEESNNNYLC SSGPEIPRLF FSEWFSSSDL  180
TDSNHNHAPS IEGTISDYQE SGDVDRFHYN NMMMNNSNWT LEDIVFGSKC QKQEHNVDRE  240
GLDCNSSDIL FSSSIMM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23161177107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157585001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196091e-128AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625714.11e-170PREDICTED: transcription factor LAF1-like
RefseqXP_013646753.11e-170transcription factor LAF1-like
RefseqXP_013646754.11e-170transcription factor LAF1-like
SwissprotQ9M0K41e-136LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0D3A6C21e-169A0A0D3A6C2_BRAOL; Uncharacterized protein
STRINGBo1g040300.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-131myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]