PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157770001
Common NameGSBRNA2T00157770001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 670aa    MW: 75501.9 Da    PI: 7.6612
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157770001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.22.9e-131331873185
                          .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          + s++++ +d +g +W++k++ r++++ +++t+ W+eF+k ++L +gD++vF ++
  GSBRNA2T00157770001 133 TPSQEIIAKDIHGHEWSFKHTLRGTPKIHLFTSDWNEFAKGKKLVAGDSFVFLRE 187
                          23569***********************************************854 PP
2Auxin_resp424.1e-15228285161
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsG 61 
                          a +++++k++F v+Y+ r  +s+F v+++k+++ +k+k+s+G++f m+fe++d +e++ sG
  GSBRNA2T00157770001 228 ALNDIRNKCMFVVFYKTR--SSQFFVNFDKFVDRVKNKFSIGSKFSMKFEGKDLNEIS-SG 285
                          568999*********999..59*********************************998.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-18106216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-17111188IPR015300DNA-binding pseudobarrel domain
CDDcd100177.16E-14113202No hitNo description
SMARTSM010191.0E-7114204IPR003340B3 DNA binding domain
PfamPF023621.4E-10134187IPR003340B3 DNA binding domain
PROSITE profilePS508639.643135204IPR003340B3 DNA binding domain
PfamPF065071.8E-11229283IPR010525Auxin response factor
PROSITE profilePS5174511.64438532IPR000270PB1 domain
SuperFamilySSF542771.7E-5440507No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MAGDQIMHAQ HEVLAIDETN NYLNGKLWKL CAGPLFDTPE IGEKLVASMN DELCQLKAIF  60
DIPSKICCNV FSINLKVETN TNETYAEVSL LHDISDVEIP TPKNENNIQN INYFTKVLSA  120
SDTSTNGGYV SATPSQEIIA KDIHGHEWSF KHTLRGTPKI HLFTSDWNEF AKGKKLVAGD  180
SFVFLREKYL GENGVSRVGI SKAAHQQHNI PTSLISKQSM HHSVVATALN DIRNKCMFVV  240
FYKTRSSQFF VNFDKFVDRV KNKFSIGSKF SMKFEGKDLN EISSGSERFL HSLEGFRMAK  300
SRTATIPRPD KVSPWEIELL THSSNISKSD DLKHKSQIEV HEFGSKMWAP TLSQGQEFRQ  360
SSIQSSMRLS FPTIYNEQMV QAMKETPTTT ATTCCRLFGV DLMVPAITKD PVEPIDSYKF  420
FKISKIFEDE RVDHVQAKSR TKVQMEGVIE RTVDLTIFDG YNQLIDELER LFDIKGELHM  480
HNQWKMFFIY DDGDMMILGD DPWPNLESSS GSASCCSMAS VSVVQRLNPK HGLRGWGLIV  540
PSDCLLCASH QEKRQHIFLV AHSPLRFDIF SRPNSISAVI QAARVPDQLQ PKAFLILAQT  600
FATREQLKHA TSSSFTTASD SSRPTIKAFP IKQQGRPRPD RSDSIHSSSR PVRAQLAAQL  660
LWWSDSTIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-652032016355Auxin response factor 1
4ldy_B2e-652032016355Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157770001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794850.0JN979485.1 Brassica rapa subsp. pekinensis auxin response factor 24 (ARF24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675256.10.0auxin response factor 22-like
TrEMBLA0A0D3E8D70.0A0A0D3E8D7_BRAOL; Uncharacterized protein
STRINGBo9g078490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35520.11e-142auxin response factor 15
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]