PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00157940001

Common Name

GSBRNA2T00157940001, LOC106394756

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 310aa MW: 35012.2 Da PI: 7.8393

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00157940001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.2	8.5e-33	77	217	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+P+d+e++ +L++kv+++k ++++ ++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ GSBRNA2T00157940001 77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrnlhplIDEFIPtLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVRtde 164 799*********9.89*99996665442222222333336******.566677888**************744445 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk++++ls + + g kk+Lv+y gr++k+ekt+Wv+h+y+l GSBRNA2T00157940001 165 eghETRWHKTGKTRPILS-QAGVAGFKKILVLYtnYGRQKKPEKTNWVIHQYHL 217 555788********.8889******6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-35	71	236	IPR003441	NAC domain
PROSITE profile	PS51005	32.11	77	236	IPR003441	NAC domain
Pfam	PF02365	6.3E-14	78	217	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MSWCDDSDDN YDPNLERASN IDHPSIQLKN QSHSCVTSAP DSKIIIEAPI VMTCSSCGQK 60 IHQQDEQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRNLHPLID EFIPTLEGEN 120 GICYTHPEKL PGVSKDGQVR HFFHRPSKAY TTGTRKRRKV RTDEEGHETR WHKTGKTRPI 180 LSQAGVAGFK KILVLYTNYG RQKKPEKTNW VIHQYHLGHS EDEKDGEPVL SKVFYQTQPR 240 QCGGSTEPKP KSRVNLNRFS YENHASFGYE HEGKNEENTQ VIREGDVACS FLSFTCDASK 300 GKESFMKKI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269\|PubMed:18952777}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269\|PubMed:18952777}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00157940001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF738268	0.0	KF738268.1 UNVERIFIED: Brassica napus NAC transcription factor 10-2-like (NAC10-2.1) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013690766.1	0.0	NAC domain-containing protein 10 isoform X1
Swissprot	F4HY61	0.0	NAC10_ARATH; NAC domain-containing protein 10
TrEMBL	A0A0D3D677	0.0	A0A0D3D677_BRAOL; Uncharacterized protein
STRING	Bo7g047040.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28470.1	0.0	NAC domain containing protein 10

Link Out ? help Back to Top
Entrez Gene	106394756

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]