PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00158017001
Common NameGSBRNA2T00158017001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 347aa    MW: 39947.3 Da    PI: 8.4097
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00158017001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.5e-086284527
                         --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                         +C  ++ tG+C+yG+rC F+H+p
  GSBRNA2T00158017001 62 NCEQYLHTGQCSYGSRCWFNHPP 84
                         7********************96 PP
2zf-CCCH31.92.3e-1087112227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          + + C  +++tG+C+yG rC+F+H+p
  GSBRNA2T00158017001  87 GPRDCEQYLQTGQCSYGRRCRFNHSP 112
                          6799********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0461440IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8121441IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-55082IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-45784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.2585784IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-56183IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-66284IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6185113IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-887112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-588115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-691112IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRHELGQSSE YPVRTGAGDC QDYLNGGCFF GRSCRYNHPP RNQMGDDTVQ PSAYKVRLGA  60
TNCEQYLHTG QCSYGSRCWF NHPPLPGPRD CEQYLQTGQC SYGRRCRFNH SPTHLAPYFQ  120
KGGCKPGSSI QYTNSMRGDG IEPMRQATTW GRRSDERRHE TESTSRAEKR ARTIPDYPSV  180
IQDVSDEVGA GQNSWLQRRR AQENVQSGKI DCGQRRVSEE ERTLRETVPC SVLVLYSQER  240
QAYDLEEQKQ RERVDENLRI DQIKATVQSD GGIQTEQRLE VETRLFFTVI TRRKIPENLQ  300
EQAEMEREKR EAQKKERSRS LTDNVDQLIQ SLQDNIRIRR KKGDGA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00158017001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022563050.10.0putative zinc finger CCCH domain-containing protein 9 isoform X1
TrEMBLA0A3P6DXV10.0A0A3P6DXV1_BRAOL; Uncharacterized protein
STRINGBo7g045340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.12e-18zinc finger nuclease 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]