PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00158020001
Common NameGSBRNA2T00158020001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 198aa    MW: 23389.1 Da    PI: 9.4951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00158020001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.2e-111136227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C+f+++tG C +G+ C+F+H++
  GSBRNA2T00158020001 11 GEKDCSFYLKTGRCDFGEFCRFNHPK 36
                         7889********************96 PP
2zf-CCCH24.25.8e-083755927
                         GGGTS--TTTTT-SS-SSS CS
              zf-CCCH  9 fartGtCkyGdrCkFaHgp 27
                         f+ +G CkyG++CkF H++
  GSBRNA2T00158020001 37 FFLGGKCKYGSTCKFKHSK 55
                         8889*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-4936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295937IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-81136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-51135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-43656IPR000571Zinc finger, CCCH-type
SMARTSM00356193755IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.0853856IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKEDEYPVRP GEKDCSFYLK TGRCDFGEFC RFNHPKFFLG GKCKYGSTCK FKHSKEGDST  60
EAMRQPNVKN LTESLLQDQK RQRTESSYGP SRERRAKTID KQRREAQNNL QEERLMIPEN  120
HNVNAQENLQ QQADMERQNR EAQEKAQEER RRQIDNERRQ ARLRLERMKP RVLTSNVDQL  180
REALPHIGIE RKEGDGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00158020001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103019.11e-113PREDICTED: putative zinc finger CCCH domain-containing protein 9
RefseqXP_022545061.11e-113putative zinc finger CCCH domain-containing protein 9
TrEMBLA0A0D3D6041e-143A0A0D3D604_BRAOL; Uncharacterized protein
STRINGBo7g045320.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.17e-18C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]