PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00158101001

Common Name

GSBRNA2T00158101001, LOC106407720

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 247aa MW: 28438.3 Da PI: 9.6816

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00158101001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	90	136	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r h + Er RR++ +++++ L++llP K +K +i+ekAv+ I++L+ GSBRNA2T00158101001 90 RRHMMKERTRREKQKQSYFALQSLLPAT------KSDKNSIVEKAVDQIRKLE 136 5699*********************9......788888********995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.68E-12	84	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.14E-9	85	140	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.4E-9	86	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.906	87	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-7	90	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-8	93	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDFFSLDSVF QEEGENFWDM IAGDVSGDGD GDKTVGVPNR SAFRSYVRDH EQRMVSSSST 60 VNVKRRMVNL LRKNWEEKKI VAVPEKERSR RHMMKERTRR EKQKQSYFAL QSLLPATKSD 120 KNSIVEKAVD QIRKLEGLKK ELERQKNVLE AKSAREHDGM NGTKVRFNVQ EPLSGIDSVV 180 EVLQCLKSMG TNLNAVQANF SPHEFSATMN IETQIRGEEV EKRVQKRLQE TEWKLLFLPE 240 ASFLRD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00158101001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189402	0.0	AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
GenBank	AC189591	0.0	AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013704047.1	0.0	transcription factor bHLH92
Swissprot	Q9FIX5	1e-116	BH092_ARATH; Transcription factor bHLH92
TrEMBL	A0A3P6EN39	0.0	A0A3P6EN39_BRAOL; Uncharacterized protein
STRING	Bo7g065640.1	1e-156	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-118	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106407720

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]