PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00158294001

Common Name

GSBRNA2T00158294001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 322aa MW: 37488.1 Da PI: 4.6303

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00158294001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39	2.2e-12	82	163	5	86
trihelix 5 qevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 qe + +e+ ++ +l+r++l+ +W ev++k+ +e ers +qC+ +nl+++ykk++ k + ss++++f++++ GSBRNA2T00158294001 82 QEAFVVLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRSERSETQCRRMVDNLKRKYKKERIKVDK-SGLGSSKWSFFNKMD 163 667777888888888999**************777889****************9987777.589999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-17	81	165	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGDSEDETGY PKKFYPLNRQ THPMYTRPIP KRHAYYHEED DDEEEQEDDG GGGYSHRERF 60 QKRLKPTKHD FSSGPSETKA EQEAFVVLEV WGDRFLQLGR RSLRNEDWNE VAEKVSEELR 120 SERSETQCRR MVDNLKRKYK KERIKVDKSG LGSSKWSFFN KMDMLLGGGS SAKPEFGLAC 180 GVDSGEFVFM NTKVYLEKSN GFDEMMDSPG DSEEDDEEEY ERRRKKGDDA ASYKLLAESV 240 ERFGKVFEKM ERSKKEQMKE LEKMRGEFQR DLELQKKQIV ERAQSEIARL REEEEENHHD 300 DGGGESEDEG MENDSDVNLS D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00158294001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022555378.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A3N6RMR6	0.0	A0A3N6RMR6_BRACR; Uncharacterized protein
TrEMBL	A0A3P6B1U9	0.0	A0A3P6B1U9_BRAOL; Uncharacterized protein
STRING	Bo3g083280.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-135	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]