PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00158445001

Common Name

GSBRNA2T00158445001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 134aa MW: 14813.5 Da PI: 6.2359

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00158445001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	79.7	4.7e-25	61	119	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y+++ed+++++++sws+++nsfvv+d++ f+ ++Lp++Fkh+nf+SFvRQLn+Y GSBRNA2T00158445001 61 FLTKTYDLVEDSRTNDVVSWSQDKNSFVVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTY 119 9********************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.2E-27	54	119	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.5E-23	56	119	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.0E-22	57	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.7E-21	61	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.9E-14	61	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.9E-14	99	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.9E-14	112	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MDRSYTCIKE VFPTGINDSP SPPSSSTSSY LHSTSMAPND PATLNSPQPI EGLHESGPPP 60 FLTKTYDLVE DSRTNDVVSW SQDKNSFVVW DPQAFSMTLL PRFFKHNNFS SFVRQLNTYT 120 PPLPPSSLSS KKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	2e-19	59	119	3	63	Heat shock factor protein 2
5d8l_B	2e-19	59	119	3	63	Heat shock factor protein 2
5d8l_D	2e-19	59	119	3	63	Heat shock factor protein 2
5d8l_F	2e-19	59	119	3	63	Heat shock factor protein 2
5d8l_H	2e-19	59	119	3	63	Heat shock factor protein 2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00158445001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189327	0.0	AC189327.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037A01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623226.1	4e-83	PREDICTED: heat stress transcription factor A-6b-like
Refseq	XP_013739498.2	3e-83	heat stress transcription factor A-6b-like
Swissprot	Q9LUH8	1e-49	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A0D3BCU0	1e-81	A0A0D3BCU0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ANK0	7e-82	A0A3P6ANK0_BRAOL; Uncharacterized protein
STRING	Bo3g081420.1	2e-82	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1256	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-50	heat shock transcription factor A6B

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]