PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P01110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 306aa    MW: 33742.8 Da    PI: 7.3494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P01110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19100149255
                     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +g+++AeIrd +     r  r++lg+++taeeAak ++ a+ +l+g
  GSMUA_Achr10P01110_001 100 RFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTYDTAEEAAKVYDSAAIRLRG 149
                             69*******.**********88.....55*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-20100157IPR016177DNA-binding domain
PROSITE profilePS5103223.288100157IPR001471AP2/ERF domain
PfamPF008477.1E-12100149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-28100157IPR001471AP2/ERF domain
SMARTSM003801.1E-33100163IPR001471AP2/ERF domain
PRINTSPR003677.7E-10101112IPR001471AP2/ERF domain
CDDcd000182.38E-23108157No hitNo description
PRINTSPR003677.7E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDAAFLVPVK RTEQVVVVTT SKPLAPPPRT VRVFCNDYDA TDSSGDEGEF CRSRRRVRRY  60
VQEIRFEAHR NAAVGKSKAV GKKRKAKPAV ASGGEDGVRR FRGVRRRPWG KYAAEIRDPW  120
RRVRVWLGTY DTAEEAAKVY DSAAIRLRGP DATTNFARPP PPPPPTKNLN LTPVSGRYDS  180
AEDPRNLSSP TSVLRGFSTC SAAAETKTSD PEERRKPPVE QGGFLPPEEE EEAFFVDLLG  240
FGASDPVSFF YDGSAEVGSL ADDSRDGFFL GSRLDLLELS STWQTGDGLF ADLGDFFPIE  300
LHPAAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1893156971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275165e-57KJ727516.1 Zea mays clone pUT5375 AP2-EREBP transcription factor (EREB96) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674903.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
RefseqXP_018674904.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLM0RED80.0M0RED8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P01110_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-26cytokinin response factor 4