PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P01150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 305aa    MW: 33121.9 Da    PI: 5.6491
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P01150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31129187259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++pr+YYrC+s+  C ++k+vers+ dp +++itY+ eHnh+
  GSMUA_Achr10P01150_001 129 SDAWAWRKYGQKPIKGSPYPRGYYRCSSSkACLARKQVERSRADPAMFIITYTAEHNHP 187
                             79*************************9989***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-30114189IPR003657WRKY domain
PROSITE profilePS5081133.499123189IPR003657WRKY domain
SuperFamilySSF1182908.89E-26126189IPR003657WRKY domain
SMARTSM007741.1E-36128188IPR003657WRKY domain
PfamPF031061.8E-25130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MADDDWDLGA VVRSCRPSGT KAAPMVPLEV ELQEAAAVGA DKGASFVGFQ RLFLGRDGLK  60
ELEELYEPCF PQVQQQQQSR WSPSPSLADA AARPSKDAHR PLSQTPRSKR RKKQQQKVAC  120
HVPSDGLSSD AWAWRKYGQK PIKGSPYPRG YYRCSSSKAC LARKQVERSR ADPAMFIITY  180
TAEHNHPVPT HRNALAGSTR HKFPSPSRGV GHPAPGNPSS SPPSSSAAAG LSPTTPLTAS  240
MEDELLQKWP HEKEDEDEEE DEDEGILLVK DMEIMGGDDL LFMGAAAPTA AAEAGEFDCG  300
DLGDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-191301901880Disease resistance protein RRS1
5w3x_D1e-191301901880Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674248.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLM0REE20.0M0REE2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P01150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-48WRKY family protein