PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P01600_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 202aa MW: 22663.4 Da PI: 7.1649

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P01600_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.1	1.4e-06	150	180	23	54
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 23 RKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +K a++ eLe+kv Le+eN++L++ el+ GSMUA_Achr10P01600_001 150 KKTAYTNELENKVSRLEEENQRLRQ-QRELEA 180 8***********************4.455555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.4E-6	150	179	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MTMATQGVGG GQQSPIQSLA RQGSLYSLTL NEVQSHLGEP LHSMNLDELL RSVIPCEDNH 60 ITMPRALSKK TVDEVWRHIQ TGQKENSDGV ADYGRQPTLG EMTLEDFLSK AGVQQQAQQS 120 RMGAFVGASL SPLDPQTPRR KRGPSEDTTK KTAYTNELEN KVSRLEEENQ RLRQQRELEA 180 MIHYIPQPEP KHQLRRTSSA AF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419828.1	1e-120	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X1
Refseq	XP_009419829.1	1e-120	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X1
Refseq	XP_018674402.1	1e-120	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X1
Swissprot	Q9C5Q2	5e-44	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	M0REI7	1e-148	M0REI7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P01600_001	1e-148	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	2e-36	bZIP family protein

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]