PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P02340_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HB-other

Protein Properties

Length: 102aa MW: 11506 Da PI: 9.2891

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P02340_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.7	4.1e-08	3	27	30	54
HHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 30 reeLAkklgLterqVkvWFqNrRak 54 ++ LAk++g+t +qV++WF N R + GSMUA_Achr10P02340_001 3 KQNLAKQTGITRNQVSNWFINARVR 27 799********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.349	1	31	IPR001356	Homeobox domain
CDD	cd00086	2.73E-8	2	32	No hit	No description
SuperFamily	SSF46689	6.84E-10	2	40	IPR009057	Homeodomain-like
Pfam	PF05920	2.6E-10	2	27	IPR008422	Homeobox KN domain
Gene3D	G3DSA:1.10.10.60	7.3E-15	2	35	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MDKQNLAKQT GITRNQVSNW FINARVRLWK PMVEEVHSLE MHQKHQPSAG REQPRPHSSS 60 KVSMFGGASN HERVSLTLGL EECGDAYFGK DVGSRLLQDF VG

Functional Description ? help Back to Top
Source	Description
UniProt	Required for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269\|PubMed:15120075, ECO:0000269\|PubMed:16741748}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419952.1	3e-71	PREDICTED: BEL1-like homeodomain protein 9
Swissprot	Q9SJJ3	3e-18	BLH8_ARATH; BEL1-like homeodomain protein 8
TrEMBL	M0RER1	4e-71	M0RER1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P02340_001	7e-72	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4433	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	1e-20	BEL1-like homeodomain 8

Publications ? help Back to Top
Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]