PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P02390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 250aa    MW: 27853.1 Da    PI: 7.7977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P02390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176082123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C + F++   L  H+++H
  GSMUA_Achr10P02390_001 60 YSCSFCRREFRSAQALGGHMNVH 82
                            99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-65787No hitNo description
PROSITE profilePS5015711.2196087IPR007087Zinc finger, C2H2
SMARTSM003550.00986082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEQARCWMWA RANYSSRPHL STQIHRLLFG SSYNQSWEEK AFAEDAAGHL GGCVWPPRSY  60
SCSFCRREFR SAQALGGHMN VHRRDRARLR QCSSVGGEAG EDQQHPNPCL MVAMASEHPP  120
QVNPNPNSGV PASSVPPRVP AAATKGNWTE DAVFSPSFSS SRAGSMEHST PLHLVLGPQL  180
KLGVENLGSK KACEDEEQNR NKRRRTETTP VFFMKSFSCD QQRVQPEALN HDTVEELDLE  240
LRLGDAPKVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125582229superman protein
2l1o_A1e-125582229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419925.10.0PREDICTED: transcriptional regulator SUPERMAN
TrEMBLM0RER60.0M0RER6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P02390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-26C2H2 family protein