PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P02500_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 337aa MW: 35819.3 Da PI: 10.1967

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P02500_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	71	131	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+al+cprCds+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+++ GSMUA_Achr10P02500_001 71 PEQALRCPRCDSSNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRTK 131 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-34	55	129	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	73	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.674	75	129	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	77	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MVLPSVPVYV DPPNWNQLGS STGGGRNEAP QLPPPPPHGL VGAPRGEGGM VGSIRPGSMA 60 ERARLAKIGQ PEQALRCPRC DSSNTKFCYF NNYSLSQPRH FCKACRRYWT RGGALRNVPV 120 GGGCRRNKRT KSGSSSSAKN AVTAAYRQSR SPSSTIAAGA TTSGITLQQQ QQSPLMSSFY 180 PPPDCRTRNL GFGFDGIQSF DAVEYQVPGS HSVGLENLRL HQHIRQFPSI MGGLEPPPPP 240 PPRTPSLTPF QSLYPSFIGE GSGSDGRSLA ALVPTRVPSS GFLMQLASTK MDDNAQELGL 300 PRHDLIWGGS AGGSGNGGWA TATGFSSFSS SLTDKFL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00483	DAP	Transfer from AT5G02460	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419940.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	M0RES7	0.0	M0RES7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P02500_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-44	Dof family protein