PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P02970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 504aa    MW: 55547.3 Da    PI: 8.6673
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P02970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.6e-41222298278
                             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             CqvegC+ dl++ak+yhr+h+vCe hsk+p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
  GSMUA_Achr10P02970_001 222 CQVEGCNIDLTTAKDYHRKHRVCESHSKSPKVIVAGKERRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPQP 298
                             **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-34214283IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.718219296IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-39220301IPR004333Transcription factor, SBP-box
PfamPF031108.9E-32222295IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEVFNQEHNP IASSPVICLI SFESRISECM RSVNNNTSNL ATSASLMDWV PKTPFPWYWE  60
TLELFSGKES EISKAAQVPD LKIDGGAFIC NRSVCSSGRG ASSVLELGNR SSKSSISASV  120
DSLSGAGKRK SQLNFDSAGR APHNLDNNII ARVEDSGTST VPVVADHPKE PLTGLKLGPT  180
YFEDVASVNN IKNLSSSATM TSSAALAKKS RVSQQNLQSP YCQVEGCNID LTTAKDYHRK  240
HRVCESHSKS PKVIVAGKER RFCQQCSRFH DLSEFDQKKR SCRRRLSDHN ARRRKPQPTA  300
ISFNSSRLSS SYYDDRHQMN LVFGRAPLGH VTTTVSFPRN NLGSFKLLQA KESWTKSNKA  360
GCTDGQLQFS SICQPNNAST LNHDLDRLLS FKGTAAEVLN QDLEASAFAS NTNITPDLRR  420
ALSLLSNDSW LAGPSSMKFV NTQNASTTQP AVNMADSTAG ILQDEQPLEH LMMLPVHLQI  480
GEFQEFQLLK APFQTSFFDS TRIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-272222951184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277294KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419993.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_009419995.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018674408.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018674409.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018674410.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotA2YGR51e-102SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLM0REX40.0M0REX4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P02970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-50squamosa promoter binding protein-like 2