PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P03700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 178aa    MW: 18645.2 Da    PI: 9.0916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P03700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00155779123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ C++ F++   L  H  +H
  GSMUA_Achr10P03700_001 57 FECKTCNRQFPSFQALGGHRASH 79
                            89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-855124No hitNo description
PfamPF139122.9E-135681IPR007087Zinc finger, C2H2
SMARTSM003550.165779IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8275784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
PfamPF139126.9E-10101125IPR007087Zinc finger, C2H2
SMARTSM003550.5102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDVFKDTKRY RLGGGGVGGG GEQIDSVNMA NVLMLLSQGG GGSGGGAEKR DHSGRVFECK  60
TCNRQFPSFQ ALGGHRASHK KPRLGGDGHG QAQGGAAKPR VHECSICGLE FAIGQALGGH  120
MRRHRTTAEG FGHGLTEKPP GDRRGTLLDL NLPPLETDLK LGLGLEIVDK IPMVGCGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5824942e-61JX582494.1 Gossypium hirsutum clone NBRI_GE15331 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420085.11e-125PREDICTED: zinc finger protein ZAT12-like
TrEMBLM0RF471e-123M0RF47_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P03700_0011e-124(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-33C2H2 family protein