PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P03710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 212aa    MW: 24039.8 Da    PI: 6.3607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P03710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-171057148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT++Ed++l++ v++lG ++W+ Ia+  g++Rt+k+c+ rw +yl
  GSMUA_Achr10P03710_001 10 RGPWTEQEDLQLACFVALLGERRWDFIAQASGLNRTGKSCRMRWVNYL 57
                            89********************************************97 PP
2Myb_DNA-binding54.72.4e-1763108148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rgr+Tt+E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  GSMUA_Achr10P03710_001  63 RGRMTTQEEHLVLELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.802557IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-19560IPR009057Homeodomain-like
SuperFamilySSF466892.25E-288104IPR009057Homeodomain-like
SMARTSM007179.9E-15959IPR001005SANT/Myb domain
PfamPF002492.8E-161057IPR001005SANT/Myb domain
CDDcd001672.73E-101257No hitNo description
PROSITE profilePS5129425.11858112IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2261111IPR009057Homeodomain-like
SMARTSM007173.0E-1462110IPR001005SANT/Myb domain
PfamPF002494.7E-1563107IPR001005SANT/Myb domain
CDDcd001676.78E-1065108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVMVKEELRR GPWTEQEDLQ LACFVALLGE RRWDFIAQAS GLNRTGKSCR MRWVNYLHPS  60
LKRGRMTTQE EHLVLELHSR WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK RAQEEKRNCS  120
PSATSSAPPA DDLPTRSEVA AESQLNGNGD GGNADSVDEV WDEIALSSGD RRDEAGGYAC  180
TPLTSATPVW ECCSGSLWKT EDEELHGVSF GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2771121105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-26311251159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-26311251159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420103.11e-157PREDICTED: myb-related protein MYBAS2-like
SwissprotQ4JL841e-70MYB59_ARATH; Transcription factor MYB59
TrEMBLM0RF481e-156M0RF48_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P03710_0011e-156(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-70myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]