PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P04450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 162aa    MW: 18169.3 Da    PI: 6.1243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P04450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-161362255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +ykGVr+++ +g+Wv+eIr+p   g r r +lg+f t+e Aa a++ a   l+g
  GSMUA_Achr10P04450_001 13 RYKGVRRRR-WGKWVSEIRVP---GSRERLWLGSFSTPEAAAVAHDTAVFFLRG 62
                            7*****777.**********8...435**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-171374IPR016177DNA-binding domain
PROSITE profilePS5103221.6281373IPR001471AP2/ERF domain
SMARTSM003803.8E-261379IPR001471AP2/ERF domain
PfamPF008475.7E-91362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-251374IPR001471AP2/ERF domain
PRINTSPR003678.0E-91425IPR001471AP2/ERF domain
CDDcd000183.72E-172174No hitNo description
PRINTSPR003678.0E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSRVGAEPSE ERRYKGVRRR RWGKWVSEIR VPGSRERLWL GSFSTPEAAA VAHDTAVFFL  60
RGPDGSRGGF NFPDRVATFA WANLSPPSVQ RVASESGMDV DARLAVHAPE AQPRPEVVLV  120
DNTRTWEEGG EHGLYRVGDE LVGDICFDAL EMHIPAQNDY RY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420162.11e-116PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I82e-33ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLM0RFC21e-114M0RFC2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P04450_0011e-115(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.15e-23ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]