PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P04570_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 255aa MW: 28458.2 Da PI: 8.6614

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P04570_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.5	1.6e-50	8	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeelv +yL++k+++ ++++ +i+e+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg GSMUA_Achr10P04570_001 8 LPPGFRFHPTDEELVAHYLCRKCADLPVPV-PIIAELDLYKYDPWQLPGLASYGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATG 93 79**************************.88***********7777799**************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v + + +kk Lvfy g+apkgekt+W+mheyrl GSMUA_Achr10P04570_001 94 ADKPVGT--PRPLAIKKALVFYAGKAPKGEKTNWIMHEYRL 132 *99..7789************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-61	5	158	IPR003441	NAC domain
PROSITE profile	PS51005	59.549	8	158	IPR003441	NAC domain
Pfam	PF02365	1.1E-26	9	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSGGDLQLPP GFRFHPTDEE LVAHYLCRKC ADLPVPVPII AELDLYKYDP WQLPGLASYG 60 EKEWYFFSPR DRKYPNGSRP NRSAGSGYWK ATGADKPVGT PRPLAIKKAL VFYAGKAPKG 120 EKTNWIMHEY RLADVDRSAR KNNSLRLDDW VLCRIYNKKG NSGSEKPGNP VSHPLHADSS 180 CSEHVLSPEF VCEREVQSQP RWRATDRDKA VGLGNPAAAY NANANSAFTQ FEPGLLSSGL 240 GDPFQDILMY LGKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-77	4	159	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054386	1e-134	BT054386.2 Zea mays full-length cDNA clone ZM_BFc0017P07 mRNA, complete cds.
GenBank	BT060534	1e-134	BT060534.2 Zea mays full-length cDNA clone ZM_BFb0012O13 mRNA, complete cds.
GenBank	BT063238	1e-134	BT063238.2 Zea mays full-length cDNA clone ZM_BFc0041I22 mRNA, complete cds.
GenBank	BT065082	1e-134	BT065082.2 Zea mays full-length cDNA clone ZM_BFb0054J18 mRNA, complete cds.
GenBank	BT067617	1e-134	BT067617.2 Zea mays full-length cDNA clone ZM_BFc0107G18 mRNA, complete cds.
GenBank	BT069291	1e-134	BT069291.2 Zea mays full-length cDNA clone ZM_BFc0043P04 mRNA, complete cds.
GenBank	BT085375	1e-134	BT085375.2 Zea mays full-length cDNA clone ZM_BFc0005B20 mRNA, complete cds.
GenBank	BT085892	1e-134	BT085892.2 Zea mays full-length cDNA clone ZM_BFc0076P05 mRNA, complete cds.
GenBank	EU956242	1e-134	EU956242.1 Zea mays clone 1559533 NAC domain-containing protein 48 mRNA, complete cds.
GenBank	HQ858713	1e-134	HQ858713.1 Zea mays clone UT1169 NAC transcription factor mRNA, partial cds.
GenBank	KP900766	1e-134	KP900766.1 Zea mays NAC protein Zma3086 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420184.1	1e-172	PREDICTED: NAC domain-containing protein 48-like
Swissprot	Q39013	1e-112	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	M0RFD4	0.0	M0RFD4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P04570_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3417	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-112	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]