PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P04720_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 253aa MW: 28480.8 Da PI: 7.3048

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P04720_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.9	1.6e-43	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyW 83 +ppGfrF Pt+eel+ +yL++k+e+++ ++e+vi+ vd+y ++Pw+Lp +++ + ++w f ++r++++a+g r++r+t sgyW GSMUA_Achr10P04720_001 4 VPPGFRFYPTEEELIGFYLQNKLENRREDMEQVIPVVDVYCLDPWQLPpLsgeHCRRDGEQWLFLCPRQEREAHGGRPTRTTPSGYW 90 69**************************99***********9535665666888*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+ v+s++++++g+k+t+vfy+gr+p+g+kt+W m+eyr+ GSMUA_Achr10P04720_001 91 KATGSLSYVFSSTNRVMGMKRTMVFYQGRTPTGTKTRWKMNEYRA 135 *****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.1E-46	3	169	IPR003441	NAC domain
PROSITE profile	PS51005	47.504	4	169	IPR003441	NAC domain
Pfam	PF02365	1.9E-22	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MNTVPPGFRF YPTEEELIGF YLQNKLENRR EDMEQVIPVV DVYCLDPWQL PPLSGEHCRR 60 DGEQWLFLCP RQEREAHGGR PTRTTPSGYW KATGSLSYVF SSTNRVMGMK RTMVFYQGRT 120 PTGTKTRWKM NEYRALEEGA TTVPLSATQK VIIASILRSE FSVCRMYTKS GCVRSFDRRP 180 AATAAAASAA TDAQRMPEVL PSGNEPSSSK RTLSHESSSS DGNGSQRSVR QRGEDDPGLI 240 GENDDCDLSQ DWF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-32	3	169	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-32	3	169	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-32	3	169	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-32	3	169	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-32	3	169	19	168	NAC domain-containing protein 19
3swm_B	5e-32	3	169	19	168	NAC domain-containing protein 19
3swm_C	5e-32	3	169	19	168	NAC domain-containing protein 19
3swm_D	5e-32	3	169	19	168	NAC domain-containing protein 19
3swp_A	5e-32	3	169	19	168	NAC domain-containing protein 19
3swp_B	5e-32	3	169	19	168	NAC domain-containing protein 19
3swp_C	5e-32	3	169	19	168	NAC domain-containing protein 19
3swp_D	5e-32	3	169	19	168	NAC domain-containing protein 19
4dul_A	5e-32	3	169	16	165	NAC domain-containing protein 19
4dul_B	5e-32	3	169	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420196.1	1e-174	PREDICTED: NAC domain-containing protein 90-like isoform X1
Swissprot	Q9FMR3	3e-68	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M0RFE9	0.0	M0RFE9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P04720_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-70	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]