PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P04780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 374aa    MW: 40720.1 Da    PI: 4.7748
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P04780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013349370323
                             ETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                             C+ Cgk F++   L++H +  H
  GSMUA_Achr10P04780_001 349 CKSCGKNFNSDNALQSHTKAkH 370
                             *****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.78347374IPR007087Zinc finger, C2H2
PROSITE patternPS000280349370IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MYIYIYISAI RSLQGIPGGF KLPLGAQNPN PPLNSPFSPR APFRPLPSRH SIPTAMEFWG  60
LEIKPEETVK VDPGEDKYLH LSQASLGETK KGNENILVYV KFNNQKLVLG TLSAEKCAQI  120
QYDLVFEKEF ELSHSSNNAS VYLCGYKTAA LEADEYPFDL PSDSDADEDI QLDQKTNGKS  180
IVKVEQTKST EGKPKVPQAN APASKAKPKI EELKKADKQK PNKDDDEDVD GEESDEDESD  240
DDEDMVEAED DSEDEDEDEV ESSDEDEAPV KMAEPPNKRP AGSALKTPVS EKKAKLISPG  300
KGESQKKGGA AKKDGHSATP IPAKQSGKTP AKNDKSKQQT PKSAGSVNCK SCGKNFNSDN  360
ALQSHTKAKH SAGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420203.10.0PREDICTED: histone deacetylase HDT2-like
TrEMBLM0RFF50.0M0RFF5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P04780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.29e-29histone deacetylase 3