PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P05070_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 228aa MW: 26351.5 Da PI: 8.727

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P05070_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.3	1.2e-56	7	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdee++++yL +kv ++ +++ ++i +vd++++ePwdLp ++k + kewyfF++rd+ky+tg+r+nrat++g+Wkatg GSMUA_Achr10P05070_001 7 LPPGFRFHPTDEEIITHYLSPKVVDHGFSA-RAIGDVDLNRCEPWDLPGRAKMGAKEWYFFCQRDRKYPTGTRTNRATEAGFWKATG 92 79************************99.89***********9999999**************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 kdke+++ +g lvg+kktLvfy+grapkgekt+Wvmheyrle GSMUA_Achr10P05070_001 93 KDKEIFKGRGVLVGMKKTLVFYRGRAPKGEKTSWVMHEYRLE 134 **************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-64	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	59.585	7	158	IPR003441	NAC domain
Pfam	PF02365	7.8E-30	8	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEECMDLPPG FRFHPTDEEI ITHYLSPKVV DHGFSARAIG DVDLNRCEPW DLPGRAKMGA 60 KEWYFFCQRD RKYPTGTRTN RATEAGFWKA TGKDKEIFKG RGVLVGMKKT LVFYRGRAPK 120 GEKTSWVMHE YRLEGTSCLS HLPKYAKDDW VVCRILHKDV VPVLDRINID SFVGAIQHML 180 ILSYQLSGIL SWINWPLFYG STCCFHHTHT SLESIQIPIR KEHKICFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	5	158	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	5	158	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	5	158	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	5	158	15	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	5	158	18	168	NAC domain-containing protein 19
3swm_B	2e-53	5	158	18	168	NAC domain-containing protein 19
3swm_C	2e-53	5	158	18	168	NAC domain-containing protein 19
3swm_D	2e-53	5	158	18	168	NAC domain-containing protein 19
3swp_A	2e-53	5	158	18	168	NAC domain-containing protein 19
3swp_B	2e-53	5	158	18	168	NAC domain-containing protein 19
3swp_C	2e-53	5	158	18	168	NAC domain-containing protein 19
3swp_D	2e-53	5	158	18	168	NAC domain-containing protein 19
4dul_A	2e-53	5	158	15	165	NAC domain-containing protein 19
4dul_B	2e-53	5	158	15	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420240.2	1e-122	PREDICTED: NAC domain-containing protein 79
Swissprot	Q9FK44	9e-91	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	M0RFI4	1e-171	M0RFI4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P05070_001	1e-172	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	4e-93	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]