PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P05090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 266aa    MW: 29546.8 Da    PI: 10.0201
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P05090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.38.5e-16262257
                            T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            r+R+t+++eq+ +Le+ F++   +p+++e +++ + l     + +++V++WFqNrR + ++
  GSMUA_Achr10P05090_001  2 RTRWTPKAEQILILESIFNSgMVNPTKDETARIRRLLerfgPVGDANVFYWFQNRRSRSRR 62
                            89*****************99****************99999****************997 PP
2Wus_type_Homeobox104.19.3e-34264365
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            rtRWtP++eQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
  GSMUA_Achr10P05090_001  2 RTRWTPKAEQILILESIFNSGMVNPTKDETARIRRLLERFGPVGDANVFYWFQNRRSRSRRRQ 64
                            79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.807163IPR001356Homeobox domain
SMARTSM003898.2E-6167IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-8267IPR009057Homeodomain-like
SuperFamilySSF466894.28E-13270IPR009057Homeodomain-like
PfamPF000462.5E-13262IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRTRWTPKAE QILILESIFN SGMVNPTKDE TARIRRLLER FGPVGDANVF YWFQNRRSRS  60
RRRQRQLQAS LVADPRAAGV AQQVGGGVQS SSAASSSSSS SAANVMLMDD SAQYLFSISR  120
QMGLMENTQS PVVRSSDTYN LKSKQTLFFS LFQGLTTLLH STSQIHLNFG FLSLRSSRCI  180
IAGTVIVFID GVLNEVPSGP IDLRAMFGQD VLLVHSSGEL LPVNEHGILM QSLQMGESYF  240
LVSNGTQYTL YLCINNALIY TKKTQM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}.
UniProtTranscription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420272.11e-115PREDICTED: WUSCHEL-related homeobox 11-like
SwissprotB8B6441e-55WOX11_ORYSI; WUSCHEL-related homeobox 11
SwissprotQ0D3I71e-55WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBLM0RFI60.0M0RFI6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P05090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.24e-28WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
    Plant Cell, 2015. 27(9): p. 2469-83
    [PMID:26307379]
  3. Zhang T, et al.
    The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.
    Front Plant Sci, 2018. 9: p. 523
    [PMID:29740464]