PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P06210_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SBP

Protein Properties

Length: 228aa MW: 25634 Da PI: 9.6399

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P06210_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	123.4	1e-38	125	201	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gC+adls ak yhrrhkvCe+h ka+vv+++gl qrfCqqCsrfh l efDe+krsCr++La+hn+rrr+++ GSMUA_Achr10P06210_001 125 RCQADGCSADLSGAKYYHRRHKVCEFHFKAAVVVAHGLPQRFCQQCSRFHVLAEFDEAKRSCRKKLADHNRRRRRRR 201 6***********************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-34	118	187	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.573	123	200	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.42E-37	123	202	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.0E-31	126	199	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MNWSSSGEAY VLSTASFAGL EGSSRKRHLW DCEASSHHHD TNHTFFPNTP IPDCRPPLLP 60 MNNLPFCWPP PTVPKNAVEP VPGGQIGLNL WGHRTYVPPS DGLETAHLFA LRSVGAHSPS 120 HTPPRCQADG CSADLSGAKY YHRRHKVCEF HFKAAVVVAH GLPQRFCQQC SRFHVLAEFD 180 EAKRSCRKKL ADHNRRRRRR RRKSQLPTTI PKSSTVNSIE ELSHHADV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	126	199	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	202	RKKLADHNRRRRRRRRK
2	194	201	RRRRRRRR
3	194	202	RRRRRRRRK
4	195	201	RRRRRRR
5	196	202	RRRRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420463.2	1e-127	PREDICTED: squamosa promoter-binding-like protein 10
Swissprot	Q8GXL3	8e-43	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	M0RFU8	1e-169	M0RFU8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P06210_001	1e-169	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2375	35	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	3e-42	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]