PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P06700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 219aa    MW: 23825 Da    PI: 6.0111
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P06700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.73.9e-3871071100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                             +C aCk+lrrkC+++Cv+apyf +eq +++fa+vhk+FGasn +kll +lp  +r++a+ ++ yeA+ar++dP+yG+v++i++lqqq
  GSMUA_Achr10P06700_001   7 PCGACKFLRRKCVRGCVFAPYFSHEQaAAHFAAVHKVFGASNASKLLMHLPVADRSEAALTISYEAQARLQDPIYGCVAHIFALQQQ 93 
                             7***********************9978*********************************************************** PP

                  DUF260  87 leqlkaelallkee 100
                             + +l+a+la+lk++
  GSMUA_Achr10P06700_001  94 VVTLEAQLASLKAQ 107
                             *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2346108IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAGLGSPCGA CKFLRRKCVR GCVFAPYFSH EQAAAHFAAV HKVFGASNAS KLLMHLPVAD  60
RSEAALTISY EAQARLQDPI YGCVAHIFAL QQQVVTLEAQ LASLKAQTAQ GFVSGYSSIP  120
RLEEDRYGNK LPPYRPGESL PLMPQPLAAD APVNPEAMLC QDNELVDSNS FQSSQLELVD  180
DNSSCAMASL DLEAYTWRSA HHHDMEDLHS VAFGRLNCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3431017104LOB family transfactor Ramosa2.1
5ly0_B4e-3431017104LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420450.11e-162PREDICTED: LOB domain-containing protein 29-like
SwissprotQ5UG134e-66LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBLM0RFZ71e-161M0RFZ7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P06700_0011e-162(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.14e-50lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Coudert Y,Périn C,Courtois B,Khong NG,Gantet P
    Genetic control of root development in rice, the model cereal.
    Trends Plant Sci., 2010. 15(4): p. 219-26
    [PMID:20153971]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Coudert Y, et al.
    Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
    BMC Genomics, 2011. 12: p. 387
    [PMID:21806801]