PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P06880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 238aa    MW: 26040.3 Da    PI: 7.1279
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P06880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-101156346
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                            +WT e ++ + +a + ++ +    W++Ia+ ++ g++ +++k+++  
  GSMUA_Achr10P06880_001 11 SWTREQEKAFENALATHPEDcsdWWEKIAANVP-GKSIEDVKNHYEL 56
                            7*********************99*********.***********75 PP
2Myb_DNA-binding38.52.7e-1280124347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT++E+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  GSMUA_Achr10P06880_001  80 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVISRTPTQVASHAQKY 124
                             6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.632762IPR017884SANT domain
SMARTSM007171.5E-6860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-5958IPR009057Homeodomain-like
SuperFamilySSF466891.05E-101062IPR009057Homeodomain-like
PfamPF002491.1E-81155IPR001005SANT/Myb domain
CDDcd001673.98E-101158No hitNo description
PROSITE profilePS5129417.14472129IPR017930Myb domain
SuperFamilySSF466899.66E-1775130IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1776127IPR006447Myb domain, plants
SMARTSM007176.6E-1077127IPR001005SANT/Myb domain
PfamPF002498.6E-1180124IPR001005SANT/Myb domain
CDDcd001679.55E-1080125No hitNo description
Gene3DG3DSA:1.10.10.601.8E-1080123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVMEEVSCSS SWTREQEKAF ENALATHPED CSDWWEKIAA NVPGKSIEDV KNHYELLLED  60
INGIDGKASK SDQERKKGIA WTEDEHRLFL LGLDKYGKGD WRSISRNFVI SRTPTQVASH  120
AQKYFIRLNS MNKERRRTSI HDITSVGNID ISTQPPITGQ TSSPVAATGS SINQSPQPYG  180
TAIGQPVGGP MMPAVGTPIN LPVPGAPHMA YGVRAVVPGA QVNIPPSTYP MPPTSCNR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420853.11e-170PREDICTED: transcription factor DIVARICATA
RefseqXP_009420854.11e-170PREDICTED: transcription factor DIVARICATA
RefseqXP_009420857.11e-170PREDICTED: transcription factor DIVARICATA
RefseqXP_009420858.11e-170PREDICTED: transcription factor DIVARICATA
RefseqXP_009420859.11e-170PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN62e-91SRM1_ARATH; Transcription factor SRM1
TrEMBLM0RG151e-177M0RG15_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P06880_0011e-178(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-93MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]