PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P07180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 479aa    MW: 51862.1 Da    PI: 9.2336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P07180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-0586108123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C+ C+k F r  nL+ H r H
  GSMUA_Achr10P07180_001  86 FVCEVCNKGFQREQNLQLHRRGH 108
                             89*******************88 PP
2zf-C2H211.90.00067162184123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k++  +s+ k H + +
  GSMUA_Achr10P07180_001 162 WKCDKCSKRYAVQSDWKAHSKIC 184
                             58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-685108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.38E-785108No hitNo description
PfamPF121713.0E-586108IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004186108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09486108IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SMARTSM00355200127157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-4149183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.38E-7157182No hitNo description
SMARTSM00355140162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAASSSTHFF GTVEQDQYSH QQPLPLPLPL PQASTIPGSS AAAPQKKKRN LPGKPSKYLN  60
IIYTFAYPDA EVIALSPRSL LATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPE  120
EVRRRVYVCP EPTCVHHDPS RALGDLTGVK KHFCRKHGEK RWKCDKCSKR YAVQSDWKAH  180
SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAQERATL PAGINSIGSH FPNHGFNEDP  240
QFASSSSSAA AAAGLFNLGF FSNSGGNTSG TQSGNLLGPD QYINNAGGVT EPTMLITGNL  300
MSNHIDTNMS SLYNPSLHSE EPQMSATALL QKAAQMGATS SGGSRSSLLR GYSGSYSAGA  360
GHASFESPGI HVESENHFQD IMNSLANGNN GVSGGVNQQV SGFSGFIPDS DKMDEGKLHH  420
NLSAGGIGGP DRLTRDFLGV GSLMRSMVRE RHLGMGMSIM DSEKKSGSSN RPFGGGRLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-33158226371Zinc finger protein JACKDAW
5b3h_F7e-33158226371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1207231e-126AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382756.11e-173PREDICTED: protein indeterminate-domain 12-like
RefseqXP_009382757.11e-173PREDICTED: protein indeterminate-domain 12-like
RefseqXP_009382758.11e-173PREDICTED: protein indeterminate-domain 12-like
SwissprotQ8GYC11e-115IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLM0RG440.0M0RG44_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P07180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]