PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P07260_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 273aa MW: 30381.7 Da PI: 5.0592

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P07260_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.6	2.9e-20	99	159	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql+ Le+ F + n +ps+++++e++ +l +++e +V++WFqNrRa+ k+ GSMUA_Achr10P07260_001 99 RQRWCPTTKQLQMLENIFDQgNGTPSKQRIKEITLELslhgQISEMNVYNWFQNRRARSKR 159 89***************99************************************97 PP
2	Wus_type_Homeobox	97.6	9.8e-32	99	161	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RW+Pt++Q+++Le+++++G tP+k++i++it eL+ +G+i++ NV++WFQNr+aR+++kq GSMUA_Achr10P07260_001 99 RQRWCPTTKQLQMLENIFDQGNGTPSKQRIKEITLELSLHGQISEMNVYNWFQNRRARSKRKQ 161 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.511	95	160	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.1E-15	95	163	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-13	97	164	IPR001356	Homeobox domain
CDD	cd00086	2.92E-14	98	161	No hit	No description
SuperFamily	SSF46689	8.55E-17	98	161	IPR009057	Homeodomain-like
Pfam	PF00046	5.8E-18	99	159	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MERQDASDSG ADGTRSSEIG EERGEGDRVA EGVLCVKVMT DEQVEVLRRQ IAVYATICEQ 60 LVEMHRAFAA DQDSLAGLKL GSGYCESMMA SGGHKMIPRQ RWCPTTKQLQ MLENIFDQGN 120 GTPSKQRIKE ITLELSLHGQ ISEMNVYNWF QNRRARSKRK QTAPSNNEYE VDTDCESPNF 180 KIFKSDEPPH EDQLVGTDNY PIHNAQVSNA LHPLGPESNQ TLGTHGSNES SKSGGMSYQN 240 FLSSQRVDQL MENMDIPGSF SPFHPGKSYG MIG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	160	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420829.1	0.0	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	4e-77	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M0RG52	0.0	M0RG52_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P07260_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-60	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]