PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P07610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 208aa    MW: 23158.1 Da    PI: 6.7196
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P07610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07333434
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                            ++C+ +e+ ++ lfC  ++  lC+ C ++ H
  GSMUA_Achr10P07610_001  3 TICDVCESAPAVLFCAADEAALCRPCDEKVH 33
                            68**************************998 PP
2zf-B_box26.41.5e-085291237
                zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                            e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  GSMUA_Achr10P07610_001 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                            679***************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
PfamPF006435.3E-6341IPR000315B-box-type zinc finger
CDDcd000215.11E-8345No hitNo description
PROSITE profilePS501199.0585196IPR000315B-box-type zinc finger
SMARTSM003362.6E-115196IPR000315B-box-type zinc finger
PfamPF006431.8E-65285IPR000315B-box-type zinc finger
CDDcd000212.15E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP REVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGH IEDLTTKAKD  120
PVEHRRDHTM IMREKMKSHR LPADPSSDAS NDRDGNIDSK MIDLNTRPVR NHGQSSTTQA  180
QNMDPSRDNN HDSPGVGVVP TGHFQSDP
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420788.11e-154PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM54e-78BBX19_ARATH; B-box zinc finger protein 19
TrEMBLM0RG871e-153M0RG87_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P07610_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-80DBB family protein