PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P07970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 267aa    MW: 28975.5 Da    PI: 8.7188
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P07970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.5e-15186222135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C nCgt+k  Tp++Rrgp g+k+LCnaCGl ++ k++
  GSMUA_Achr10P07970_001 186 CLNCGTSKnsTPMMRRGPAGPKSLCNACGLTWANKHS 222
                             99*******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.8754782IPR010399Tify domain
SMARTSM009795.5E-84782IPR010399Tify domain
PfamPF062004.7E-114880IPR010399Tify domain
PfamPF062031.2E-14113155IPR010402CCT domain
PROSITE profilePS5101711.518113155IPR010402CCT domain
SuperFamilySSF577164.66E-11179226No hitNo description
SMARTSM004018.9E-8180233IPR000679Zinc finger, GATA-type
CDDcd002021.19E-11185238No hitNo description
Gene3DG3DSA:3.30.50.107.8E-14185224IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440186213IPR000679Zinc finger, GATA-type
PfamPF003201.2E-13186222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MYGSMDDDPF MRGRHFVSEI DGIGAATTAA EAEVAPSIEG STPLQPQPPG PNQLTLSFQG  60
QVYIFDSVQP ERVHAVLLLL NGQQSPEFGG MAVPSHQNYR SVDEASGSKN GQRLASILRF  120
KEKKKNLCFK KKVLYTVRKE VASRMKRNKG QFASSKANSE EVASVTSSWD PAKSNDQEEK  180
DQHAFCLNCG TSKNSTPMMR RGPAGPKSLC NACGLTWANK HSLRSHLKVS APGTQTMIQD  240
EQGDKDSVVA SNSYMFSAST DGHGSIS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420751.10.0PREDICTED: GATA transcription factor 28-like
SwissprotQ8H1G01e-59GAT28_ARATH; GATA transcription factor 28
TrEMBLM0RGC30.0M0RGC3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P07970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3754933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-53ZIM-LIKE 2