PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P08350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 268aa    MW: 29985.9 Da    PI: 7.4056
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P08350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-181462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            rg+W++eEde+l+  ++q+G+g +W t ++++g++R++k+c++rw++yl
  GSMUA_Achr10P08350_001 14 RGPWSPEEDEKLKSHIEQHGTGgNWITLPQKIGLKRCGKSCRLRWLNYL 62
                            89*********************************************97 PP
2Myb_DNA-binding41.82.6e-1369111246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g +++eEd ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr10P08350_001  69 GGFSEEEDNIICRLYISIGSR-WSVIAAQLP-GRTDNDVKNHWNT 111
                             569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.677962IPR017930Myb domain
SuperFamilySSF466895.31E-2711109IPR009057Homeodomain-like
SMARTSM007175.4E-131364IPR001005SANT/Myb domain
PfamPF002495.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-241569IPR009057Homeodomain-like
CDDcd001671.37E-101662No hitNo description
PROSITE profilePS5129421.95863117IPR017930Myb domain
SMARTSM007171.3E-1167115IPR001005SANT/Myb domain
PfamPF002499.0E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2370117IPR009057Homeodomain-like
CDDcd001672.29E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDEKLKSHIE QHGTGGNWIT LPQKIGLKRC GKSCRLRWLN  60
YLRPNIRHGG FSEEEDNIIC RLYISIGSRW SVIAAQLPGR TDNDVKNHWN TRLKKKLFGK  120
QCDDRRRHTH RITRPEQDNI DHGTGDLGII STGVSQSDCY WAQQPALSYP PLRPVCEGSA  180
TPVAPPPQSV SCYEGYQSPT GFLTELDEMF QFNSVKLEGL DCFNEMNGGS ASAGMNWNQV  240
SPLLCVVHGM QQLPPLEEPV QLGTSVDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25141177108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113126KKKLFGKQCDDRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420704.10.0PREDICTED: transcription factor MYB36
TrEMBLM0RGG10.0M0RGG1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P08350_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-78myb domain protein 84