PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P08670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 222aa    MW: 24098.7 Da    PI: 8.0696
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P08670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.16.9e-173995359
                            XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                  bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59
                            ++kr rr+++NRe+ArrsR+RK+a + eLe  v++L  eN++L k+l  +++++ + 
  GSMUA_Achr10P08670_001 39 DVKRLRRMISNRESARRSRRRKQAHLSELEAQVAQLRVENSSLLKRLADINQKYNEA 95
                            579********************************************9999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.1E-133693No hitNo description
SMARTSM003382.0E-2037101IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.6223994IPR004827Basic-leucine zipper domain
PfamPF001702.6E-144093IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-124092No hitNo description
CDDcd147025.65E-74293No hitNo description
PROSITE patternPS0003604459IPR004827Basic-leucine zipper domain
PfamPF124981.1E-17108154IPR020983Basic leucine-zipper, C-terminal
PfamPF124982.1E-10154195IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQNSGVQGRP ATSGSSREYS DEDEADGEAE TRENMDPTDV KRLRRMISNR ESARRSRRRK  60
QAHLSELEAQ VAQLRVENSS LLKRLADINQ KYNEAAVDNR VLKADVETLR AKVKMAEDSV  120
KQLTGINPLN PTISDMSARS IPFSGSPSDA SDASIASVTP VDVVHGAVAG GKMGRTASMQ  180
RVASLEHLQK KICGGGQNSC ISAQCDSTWD PESSVNNKQN QA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15360RRSRRRKQ
25560SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420671.11e-144PREDICTED: light-inducible protein CPRF2-like
SwissprotQ7X9A83e-67RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLM0RGJ31e-161M0RGJ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P08670_0011e-162(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.12e-51bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]