PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P09560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 294aa    MW: 32027.7 Da    PI: 6.4108
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P09560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-2091141256
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                             +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  GSMUA_Achr10P09560_001  91 RYRGVRRRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 141
                             69*******.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103226.04291148IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2391149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3291150IPR001471AP2/ERF domain
PfamPF008471.6E-1491140IPR001471AP2/ERF domain
SMARTSM003802.4E-3591154IPR001471AP2/ERF domain
PRINTSPR003678.4E-1292103IPR001471AP2/ERF domain
CDDcd000182.43E-1499149No hitNo description
PRINTSPR003678.4E-12114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEYERSVMVS ALVHVVAGGR GTEAPPGGGN GQTRWNEGFV HEAASELHAS FGDFGRSSSS  60
AASADATEQT AAPAAEAAAA MAGTEQGERV RYRGVRRRPW GKWAAEIRDP HKAARVWLGT  120
FDTAEAAARA YDEAALRFRG NRAKLNFPEE AGLRKAPAVT PEAHMESQPF GRHGASGSTA  180
AVAARDYMEY SRLLRGEGEY QRMPPTALLD QMMYSGASAA SPFTDASLAS SSFASAPFPP  240
SSPLIYPPES EQQMDYLQPP PWKLYNLIRH QVTKPQYFFE EPWLTVEVFL PKSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2182153877Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420584.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLM0RGT20.0M0RGT2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P09560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.14e-14related to AP2 6