PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P09730_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 404aa MW: 40670.8 Da PI: 11.1277

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P09730_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	35.7	2.9e-11	145	174	2	31
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaar 31 a++k++++++hTkv+gR+RR+R++a caar GSMUA_Achr10P09730_001 145 APAKRSSKDRHTKVDGRGRRIRMPAICAAR 174 789*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.4E-7	150	174	IPR005333	Transcription factor, TCP
Pfam	PF03634	7.9E-5	174	232	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MEQSELSRHG GQGGGGAGTG GGGGGGGRGG RVRANSNSSS GTSSSRSTSE HHQPQHHFGH 60 HHHQQQKQQG NSSIPSSLEL VPLKNRAGPS SVAPFMGSIV HHGVVDASLA ISTAKPDPSL 120 SPGAVGPSSS SAAADTSKKL AGGGAPAKRS SKDRHTKVDG RGRRIRMPAI CAARQAEPAI 180 IATTGTGTIP ANFSTLNISL RSSGSSLSAP PSKSAPLSFH ALALAHHRPD FEQVTDPGMS 240 HAAAMLGLQG GGSSGGGDSA DTYLRKRFRE DLFKDEQPEG SGGAGPSSPS SASKSMRAGS 300 GLQLHQRSQQ QEAAAAAAAA GGAFWMLPVS TGSAAPAVAA ATGPSEPSIW TFPAMAGQYR 360 PGISGGSSIQ APLQFMSRIN LSGASRTGNV GNQSRDARGP QCIQ

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MEQSELSRHG GQGGGGAGTG GGGGGGGRGG RVRANSNSSS GTSSSRSTSE HHQPQHHFGH  60
HHHQQQKQQG NSSIPSSLEL VPLKNRAGPS SVAPFMGSIV HHGVVDASLA ISTAKPDPSL  120
SPGAVGPSSS SAAADTSKKL AGGGAPAKRS SKDRHTKVDG RGRRIRMPAI CAARQAEPAI  180
IATTGTGTIP ANFSTLNISL RSSGSSLSAP PSKSAPLSFH ALALAHHRPD FEQVTDPGMS  240
HAAAMLGLQG GGSSGGGDSA DTYLRKRFRE DLFKDEQPEG SGGAGPSSPS SASKSMRAGS  300
GLQLHQRSQQ QEAAAAAAAA GGAFWMLPVS TGSAAPAVAA ATGPSEPSIW TFPAMAGQYR  360
PGISGGSSIQ APLQFMSRIN LSGASRTGNV GNQSRDARGP QCIQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420570.1	1e-164	PREDICTED: transcription factor TCP8-like
TrEMBL	M0RGU9	0.0	M0RGU9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P09730_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.2	2e-11	TCP family protein