PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P10440_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 267aa MW: 28874.7 Da PI: 10.3701

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P10440_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.9	6.2e-15	185	239	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 l+r++r++kNRe+A rsR+RK+a+i+eLe v Le+ +L leelk + GSMUA_Achr10P10440_001 185 TLQRQKRMIKNRESAARSRERKQAYIAELESLVTRLEQDKAQLLRSLEELKRTRF 239 699************************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.8E-12	183	247	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.875	185	236	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-13	185	240	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.20E-18	187	237	No hit	No description
SuperFamily	SSF57959	7.5E-10	187	238	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-13	188	237	No hit	No description
PROSITE pattern	PS00036	0	190	205	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MASSRVMASS PSANSDLTRQ SSACSLPIAD LQSSVSGGGG RGLGKTLGSM SMEDLFRNIY 60 GGGGGGEGGD PMSRQGSFVL PKVVGEKAVE EVWRQMGADR RPDGGDGSVA EMTLEDFLAR 120 AGAVGEEDVG VASGWSPVIL GPSPIMVDRL VQQQQFAAGL GKAEGAERGG RGKKRPMLDP 180 VDRATLQRQK RMIKNRESAA RSRERKQAYI AELESLVTRL EQDKAQLLRS LEELKRTRFK 240 QLTENVVPVT ESKRPNRPLR RTSSMEW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420505.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X1
Swissprot	Q0JHF1	5e-42	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	M0RH20	0.0	M0RH20_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P10440_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	8e-31	G-box binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]