PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P10800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 260aa    MW: 29977.9 Da    PI: 10.3647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P10800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-171964147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            rg W + Ede+l ++v+++G+++W++Ia+++  gR++k+c++rw++ 
  GSMUA_Achr10P10800_001 19 RGHWRPGEDEKLRQLVEEFGPRNWNSIAEKLK-GRSGKSCRLRWFNQ 64
                            899****************************9.***********996 PP
2Myb_DNA-binding54.72.3e-1772114246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              ++T++E+e+lv a + +G+  W++Iar ++ gRt++ +k++w+ 
  GSMUA_Achr10P10800_001  72 RPFTEQEEERLVAAQQVHGNQ-WALIARLFP-GRTDNAVKNHWHV 114
                             69*****************99.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0421469IPR017930Myb domain
SuperFamilySSF466891.46E-2818112IPR009057Homeodomain-like
SMARTSM007171.5E-141867IPR001005SANT/Myb domain
PfamPF002497.0E-171964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-262072IPR009057Homeodomain-like
CDDcd001671.94E-122263No hitNo description
SMARTSM007171.4E-1470118IPR001005SANT/Myb domain
PROSITE profilePS5129420.53870120IPR017930Myb domain
PfamPF002495.7E-1471113IPR001005SANT/Myb domain
CDDcd001675.27E-1073113No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2073118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MESTSSASAG SGGTKACRRG HWRPGEDEKL RQLVEEFGPR NWNSIAEKLK GRSGKSCRLR  60
WFNQLDPRIN KRPFTEQEEE RLVAAQQVHG NQWALIARLF PGRTDNAVKN HWHVIVARRH  120
RERSKLVRKR PLQRFQILSD VELSSIHLLP QTYPNPKRSS SVYRRSSQLH DQPPRRYRRL  180
PRWSLVACEE DAKYKKAAPL DSGKCSSESD CCHAVNACEM VGHGDDSDMS IDHRAMNEKT  240
DRRKNVPFID FLGEIFVPNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30191197107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421171.10.0PREDICTED: transcriptional activator Myb
TrEMBLM0RH560.0M0RH56_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P10800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-64myb domain protein 52