PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P11020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 242aa    MW: 26380 Da    PI: 8.1918
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P11020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.94.9e-3384138459
             ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                             v+Y+eClkNhAa++Gg+a+DGCgEfmps geegt +alkC+AC+CHRnFHR+eve 
  GSMUA_Achr10P11020_001  84 VKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGTLEALKCSACNCHRNFHRKEVEG 138
                             89*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.6E-3084136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2584147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.7E-3185136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.41886135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.5E-31163236IPR009057Homeodomain-like
SuperFamilySSF466892.81E-19166235IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-28174230IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDLSGHDGDI PIPIPITSTY VVGHGPPHGH GMTHDTSPLH HRSSGSSPPP AAAAAAPPPP  60
LSAATTEDHH HSTNPYSTKK GLVVKYRECL KNHAAAIGGN ATDGCGEFMP SGEEGTLEAL  120
KCSACNCHRN FHRKEVEGEP PPHMIMPLGA MQTSESDEME GAGGGMMARP PLVKKRFRTK  180
FTAEQKEKML HFAEKAGWRL QKQEESAVQQ FCQEIGVKRR VLKVWMHNNK HNLAKKTPLQ  240
LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-251752321875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421143.11e-154PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotO647222e-70ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLM0RH781e-180M0RH78_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P11020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-69homeobox protein 31
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]