PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P12590_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 240aa MW: 25986.5 Da PI: 9.9921

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P12590_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.1	1.3e-30	60	113	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl GSMUA_Achr10P12590_001 60 RPRLVWTPQLHKRFVDAVAHL-GINNAVPKTIMQLMGVDGLTRENVASHLQKYRL 113 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.25E-20	57	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.818	57	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-31	59	118	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-24	61	113	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-8	63	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MPLSQALITP DLALAFGIPS SSSAPTTGAD PAPDDLLRGP HSSDLNGGRG EEEPARTLKR 60 PRLVWTPQLH KRFVDAVAHL GINNAVPKTI MQLMGVDGLT RENVASHLQK YRLYLKRMQM 120 QGLNPSSPSS APQPFLGRMP VAALQHHQQN TAPVQLQQQH QYYHQTHLGH FPGSGPGFLT 180 RNMQPPPVTH RTMGLVPGMG SAPVPPHSTA AAYLNTSEWS GMGEGGARRK ELTLFPTGED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-32	60	116	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX620518	1e-72	JX620518.1 Gossypium hirsutum clone NBRI_GE66774 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420974.1	1e-175	PREDICTED: transcription factor PCL1-like
Swissprot	O22210	1e-41	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	M0RHN5	1e-174	M0RHN5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P12590_001	1e-175	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1620	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05090.1	5e-50	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]