PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P12820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 244aa    MW: 26869.8 Da    PI: 8.2106
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P12820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.85.7e-161979257
                            T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            r+R+t+++eq+ +Le+ F++   +p +ee  ++ k l    ++ +++V++WFqNrR + ++
  GSMUA_Achr10P12820_001 19 RSRWTPKPEQILILESIFNSgMVNPPKEETVRIRKLLerfgSVGDANVFYWFQNRRSRSRR 79
                            89*****************99*************************************997 PP
2Wus_type_Homeobox106.91.2e-341881265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            +r+RWtP+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
  GSMUA_Achr10P12820_001 18 VRSRWTPKPEQILILESIFNSGMVNPPKEETVRIRKLLERFGSVGDANVFYWFQNRRSRSRRRQ 81
                            589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-91284IPR009057Homeodomain-like
SuperFamilySSF466895.56E-141485IPR009057Homeodomain-like
PROSITE profilePS5007111.5641580IPR001356Homeobox domain
SMARTSM003895.5E-61784IPR001356Homeobox domain
PfamPF000461.0E-131979IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDEQRNSPNR SSTAAEAVRS RWTPKPEQIL ILESIFNSGM VNPPKEETVR IRKLLERFGS  60
VGDANVFYWF QNRRSRSRRR QRQLQASGGA VLYEPASSSS SSTSSNNSSG GGSFFPCSSS  120
ASSSFSSLVV HDGGGDDLFS ISRQMGFMGS GQNPYLFSVS KQEHLFDQSN RSQLNSDYNP  180
WTITVFINGI PSEVPRGPID LKATFGQNVT LVHSSGELLP INEYGILLQS LQMGESYFLV  240
SCSI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}.
UniProtTranscription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420954.11e-116PREDICTED: WUSCHEL-related homeobox 11-like
SwissprotB8B6443e-68WOX11_ORYSI; WUSCHEL-related homeobox 11
SwissprotQ0D3I73e-68WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBLM0RHQ81e-177M0RHQ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P12820_0011e-177(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.15e-35WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
    Plant Cell, 2015. 27(9): p. 2469-83
    [PMID:26307379]
  3. Zhang T, et al.
    The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.
    Front Plant Sci, 2018. 9: p. 523
    [PMID:29740464]