PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P13120_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

S1Fa-like

Protein Properties

Length: 80aa MW: 8697.37 Da PI: 10.5154

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P13120_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	129.6	9.1e-41	15	80	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++ akGlnPGl+vllvvgglll+fl gny+ly+yaqk+lPP+kkkPvskkklkreklkqGv++PGe GSMUA_Achr10P13120_001 15 EQAAKGLNPGLVVLLVVGGLLLLFLGGNYVLYMYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80 4557*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	9.3E-39	16	80	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MDEQYSDAAG NVIREQAAKG LNPGLVVLLV VGGLLLLFLG GNYVLYMYAQ KTLPPKKKKP 60 VSKKKLKREK LKQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009421389.1	2e-49	PREDICTED: DNA-binding protein S1FA-like
Refseq	XP_009421390.1	2e-49	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q7XLX6	2e-21	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	M0RHT8	4e-48	M0RHT8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P13120_001	6e-49	(Musa acuminata)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]