PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P13530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 188aa    MW: 20292.7 Da    PI: 8.8698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P13530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00156486123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ C+++F++   L  H  +H
  GSMUA_Achr10P13530_001 64 FECKTCSRRFPTFQALGGHRTSH 86
                            89**********99998888877 PP
2zf-C2H214.88.1e-05107129123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++Cp Cg +F+    L  H+r+H
  GSMUA_Achr10P13530_001 107 HSCPVCGLVFPMGQALGGHMRRH 129
                             79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.97E-862129No hitNo description
PROSITE profilePS5015710.6586491IPR007087Zinc finger, C2H2
SMARTSM003550.366486IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-116487IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM003550.04107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.889107134IPR007087Zinc finger, C2H2
PfamPF139121.6E-10107130IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MQEADTSSVI RPREASVTAG GGREQETGST EMDSLLLMLS CEEKQRGEVG GASRPSGAGG  60
VRQFECKTCS RRFPTFQALG GHRTSHTRPR GRGDGCNPVQ KMRPKLHSCP VCGLVFPMGQ  120
ALGGHMRRHK TAAPDAHAAR EGGARELRWL DLNLPPLENE LQLQSLGFRY TAEGSATRDS  180
SSYSSHSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421349.21e-136PREDICTED: zinc finger protein ZAT11-like
TrEMBLM0RHX91e-134M0RHX9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P13530_0011e-135(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-24C2H2 family protein