PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P14070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 217aa    MW: 23020.7 Da    PI: 4.6453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P14070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-1856104355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  GSMUA_Achr10P14070_001  56 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 104
                             9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1254104IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2155113IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-3255113IPR001471AP2/ERF domain
SMARTSM003802.4E-3655118IPR001471AP2/ERF domain
PROSITE profilePS5103223.48555112IPR001471AP2/ERF domain
CDDcd000183.56E-3156114No hitNo description
PRINTSPR003679.6E-115667IPR001471AP2/ERF domain
PRINTSPR003679.6E-117894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSSSLSSPSS TTTSSSPSRA LQAIDESNQA MATSTGGSKS GAGTKRPRDG GTLPAYRGVR  60
MRAWGKWVSE IREPRKKSRI WLGTFPTAEM AARAHDVAAL SIKGATAVLN FPELAATLPR  120
PATLSPRDVQ AAAAKAAAMV PAPSPATPDD PDTSDELGEI VELPRLDGCL LDSANSGGEF  180
VYHDAVDSWA PWVETEFGLE PDQMWDPTTF GALLWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1850113973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1575756e-90KC157575.1 Musa AB Group CBF7-1 protein (CBF7-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421285.11e-155PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD34e-59DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM0RI331e-154M0RI33_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P14070_0011e-155(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]