PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P14370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 256aa    MW: 27816.8 Da    PI: 10.1044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P14370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.4e-1467113354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++h+e+ErrRR+riN+ ++ Lr+++P a      Kl+Ka+ L+++++++k+L
  GSMUA_Achr10P14370_001  67 KSHSEAERRRRERINHHLAVLRSMIPCA-----DKLDKAALLTQVINHVKKL 113
                             58*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6564113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-467115No hitNo description
PfamPF000105.4E-1267113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1467124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1368122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1370119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGSVPVGDLG FLRGFPNGLG FGFGSDSSSS STVLDLERRE FVKAPSRLGG KKEGGGVVDA  60
KTALALKSHS EAERRRRERI NHHLAVLRSM IPCADKLDKA ALLTQVINHV KKLKKNAAEI  120
SEGYTIPSDV DEVRVEVEGD ATKSGSFIVK ASLCCEEGPE ILTDLRQTLQ SLHLKIIRAE  180
ISTLGGRVKN VLVMTSDGSS RAIDKHVLMA TVHQALKSIL DRVNSQVDFL PRTSFSSKRR  240
RISPFESSSS SSSLLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14855GGKKEGGG
27277ERRRRE
3237241KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421255.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLM0RI630.0M0RI63_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P14370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-38bHLH family protein