PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P15510_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ERF

Protein Properties

Length: 226aa MW: 24588.4 Da PI: 6.793

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P15510_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.7	3.8e-15	66	117	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr ++ grWv+e+r+p++ + r++lg+f t+e Aa+a++ a+ +l+ge GSMUA_Achr10P15510_001 66 PVYHGVR-ERNGGRWVCEVREPRK---KSRIWLGTFRTPEVAARAHDVAAIALRGE 117 689*9.7779**999843...6************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.5E-10	66	117	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.167	67	124	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-29	67	126	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-19	67	126	IPR016177	DNA-binding domain
SMART	SM00380	1.9E-26	67	130	IPR001471	AP2/ERF domain
CDD	cd00018	1.07E-25	68	126	No hit	No description
PRINTS	PR00367	2.8E-7	68	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-7	90	106	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDFEDSSSTS SASSSSCSSS SSLTSSSNQR FPSGLSTACS APASRATAPS PKRKAGRKKF 60 RETRHPVYHG VRERNGGRWV CEVREPRKKS RIWLGTFRTP EVAARAHDVA AIALRGESAH 120 LNFPDSAWVL PRATSSAAED VRRAAAEAAE MFGASETRSQ QEAVAAPEAA AWMPSALFVD 180 EEALFNMPGL LDDMARGMLL TPLAMQTGFD WDRVDEHHMD LSLWAD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-13	65	124	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009379780.1	1e-128	PREDICTED: dehydration-responsive element-binding protein 1F-like
Swissprot	A2WZI4	2e-62	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	2e-62	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	M0RIH7	1e-162	M0RIH7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P15510_001	1e-163	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP196	36	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25490.1	3e-40	C-repeat/DRE binding factor 1

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]