PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P16280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 181aa    MW: 19818.4 Da    PI: 6.4837
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P16280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06447542
                zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                             C+ +e+  +   C  ++  lC  C ++ H        H++vpl
  GSMUA_Achr10P16280_001  4 QCDVCERATAAVLCCADEAALCWGCDEKVHAAnklagmHQRVPL 47
                            7*****************************66899999999986 PP
2zf-B_box30.38.7e-1061101438
                zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                             + C+ ++ek   +fC +++ +lC++C +++H        H+
  GSMUA_Achr10P16280_001  61 PSCDICQEKAGYFFCLEDRAMLCRQCDVTIHTAspyvssHR 101
                             68*****************************5566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.826147IPR000315B-box-type zinc finger
CDDcd000211.95E-6347No hitNo description
SMARTSM003361.0E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.91658105IPR000315B-box-type zinc finger
SMARTSM003361.4E-1158105IPR000315B-box-type zinc finger
CDDcd000212.38E-661105No hitNo description
PfamPF006431.5E-761101IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKIQCDVCER ATAAVLCCAD EAALCWGCDE KVHAANKLAG MHQRVPLLLP ANSSSSSSHI  60
PSCDICQEKA GYFFCLEDRA MLCRQCDVTI HTASPYVSSH RRFLITGVRV GLQDKITSNS  120
NNGSSCSNSS NSTLRSAVSI DSIADKMVVE EGVKSQWPWH ELLDSLELDQ RYRLSNPGSF  180
S
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379901.11e-133PREDICTED: B-box zinc finger protein 22-like
RefseqXP_018675381.11e-133PREDICTED: B-box zinc finger protein 22-like
RefseqXP_018675382.11e-133PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM21e-56BBX22_ARATH; B-box zinc finger protein 22
TrEMBLM0RIQ31e-131M0RIQ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P16280_0011e-132(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-55light-regulated zinc finger protein 1