PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P16940_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 218aa MW: 24836.1 Da PI: 7.9725

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P16940_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131.6	5.8e-41	14	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+e+d+ +++PwdLp ++e+ y Fs r+ +y + +r+n ++sg Wk g GSMUA_Achr10P16940_001 14 LPPGFRFHPTDEELVVQYLKRKVYSFPLPA-SIIPEIDLRNHDPWDLP---GGREEVRYLFSFREATYLNRNRSNPRARSGCWKVAG 96 79**************************.89***********...3455677*************999***** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++v+++ +++vg+kk+Lvfy+g+ p+ +tdW+mheyrl GSMUA_Achr10P16940_001 97 KERQVVASgCNQVVGMKKVLVFYRGKPPT--RTDWIMHEYRL 136 **9977889******999998..9******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-50	7	166	IPR003441	NAC domain
PROSITE profile	PS51005	49.07	14	166	IPR003441	NAC domain
Pfam	PF02365	2.4E-24	15	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDNTGFVRHG MLRLPPGFRF HPTDEELVVQ YLKRKVYSFP LPASIIPEID LRNHDPWDLP 60 GGREEVRYLF SFREATYLNR NRSNPRARSG CWKVAGKERQ VVASGCNQVV GMKKVLVFYR 120 GKPPTRTDWI MHEYRLARPD ANPRNDATHS SMVPNGDWVL CRIFRKKRAA KMEAEEDDEQ 180 AGEQMMRMGD DGSSCVTELP DVSSDGEEAS SSSMSSPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-41	12	171	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-41	12	171	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-41	12	171	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-41	12	171	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-41	12	171	18	173	NAC domain-containing protein 19
3swm_B	2e-41	12	171	18	173	NAC domain-containing protein 19
3swm_C	2e-41	12	171	18	173	NAC domain-containing protein 19
3swm_D	2e-41	12	171	18	173	NAC domain-containing protein 19
3swp_A	2e-41	12	171	18	173	NAC domain-containing protein 19
3swp_B	2e-41	12	171	18	173	NAC domain-containing protein 19
3swp_C	2e-41	12	171	18	173	NAC domain-containing protein 19
3swp_D	2e-41	12	171	18	173	NAC domain-containing protein 19
4dul_A	2e-41	12	171	15	170	NAC domain-containing protein 19
4dul_B	2e-41	12	171	15	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009379969.1	1e-163	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	2e-68	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	M0RIW9	1e-162	M0RIW9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P16940_001	1e-163	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8233	30	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	9e-70	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]