PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P17130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 658aa    MW: 73067.9 Da    PI: 10.0637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P17130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08477524455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GSMUA_Achr10P17130_001 477 AHSLAERVRREKISKRMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 524
                             8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.2E-2267137IPR001623DnaJ domain
SuperFamilySSF465653.93E-2267139IPR001623DnaJ domain
SMARTSM002719.6E-2268128IPR001623DnaJ domain
PROSITE profilePS5007619.4969136IPR001623DnaJ domain
CDDcd062572.51E-1870125IPR001623DnaJ domain
PfamPF002266.3E-2070133IPR001623DnaJ domain
PRINTSPR006253.6E-147189IPR001623DnaJ domain
PRINTSPR006253.6E-1489104IPR001623DnaJ domain
PRINTSPR006253.6E-14108128IPR001623DnaJ domain
PROSITE patternPS006360113132IPR018253DnaJ domain, conserved site
SuperFamilySSF474596.28E-17471542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-9471528No hitNo description
Gene3DG3DSA:4.10.280.105.1E-17473541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205473523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5477524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9479529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MTAGLVVYRN RTYLSPTTTR VGGGGGGGRV RFGRVQLQWS GGGWPSLRLS TFRPRAAVEE  60
GFVRENAGSF YDLLGVPASG STSAIKKAYK QLARKYHPDV SPPERAAEYT RRFIEVHEAY  120
ETLSDPGRRA IYDRDLTRSL PLAFSASRCR FDEEPEERSG WRNHWQDQLT ELKRRSMNGS  180
SKDNLSWGAQ MRRRRAEEER SDSDLGSSSK SLVDLIKRWR RRGMDVQKAR FQSCQMRILF  240
CFHRWHVVLS TKTQRVADAS CYGTPLNSPP KLNLSVIDHR QQGRGGPPMP VNRVPGPHLG  300
PLSAEPGFED GAARLSCFAG RSSGIGQSRS ERPAHLETEM RSTIGGSSTA EESELGNGPE  360
ESSLSHRMTA EASSLRGIAD NNSGKWKTAA KRKGREAPLS SSATNPPANM TEEENSDAKR  420
CKSADRNGGA KNAAVKPKTE QNGDPGHREG KDNDHKPPEP PKDYIHVRAR RGQATDAHSL  480
AERVRREKIS KRMKFLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEFL SMKLTTLNPQ  540
MDVSMENFLP KDMYQSRGLM PQPVYPAEIG TVLSYAHQPQ TIALQSVMTS GLEAQFSLNS  600
LQSSLRQSQS MQHATTDAYT DAPSQLGGLW EDDLQSVAQT GFGQNHGQTH TSRMKIEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5vso_A2e-15701341273Yeast dnaJ protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172194KRRSMNGSSKDNLSWGAQMRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379992.10.0PREDICTED: transcription factor bHLH77 isoform X2
RefseqXP_018674412.10.0PREDICTED: transcription factor bHLH77 isoform X2
TrEMBLM0RIY80.0M0RIY8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P17130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-64bHLH family protein